erigon-pulse/core/generate_index.go
ledgerwatch e5692d1726
Various fixes to staged sync and experiments (#608)
* First commit

* Fix the one-off error

* Fix formatting

* Ability to execute stage5 separately

* Clean up intermediate hashes and stage5 progress

* Fix linter

* Print original keys when extracting

* channel

* More logging

* More logging

* Remove excess logging

* fix stage2

* Revert

* Fix stage2

* Add provider exhausted

* Sort sortable buffer

* Fix test

* Another cleanup

* Remove exhaust log
2020-06-03 13:03:40 +01:00

565 lines
16 KiB
Go

package core
import (
"bufio"
"bytes"
"container/heap"
"encoding/binary"
"errors"
"fmt"
"github.com/ledgerwatch/turbo-geth/common/changeset"
"github.com/ledgerwatch/turbo-geth/common/etl"
"io"
"io/ioutil"
"os"
"runtime"
"sort"
"github.com/ledgerwatch/turbo-geth/common"
"github.com/ledgerwatch/turbo-geth/common/dbutils"
"github.com/ledgerwatch/turbo-geth/ethdb"
"github.com/ledgerwatch/turbo-geth/log"
)
func NewIndexGenerator(db ethdb.Database, quitCh chan struct{}) *IndexGenerator {
return &IndexGenerator{
db: db,
ChangeSetBufSize: 256 * 1024 * 1024,
TempDir: os.TempDir(),
}
}
type IndexGenerator struct {
db ethdb.Database
ChangeSetBufSize uint64
TempDir string
quitCh chan struct{}
}
var mapper = map[string]struct {
IndexBucket []byte
WalkerAdapter func(v []byte) changeset.Walker
KeySize int
Template string
New func() *changeset.ChangeSet
Encode func(*changeset.ChangeSet) ([]byte, error)
}{
string(dbutils.AccountChangeSetBucket): {
IndexBucket: dbutils.AccountsHistoryBucket,
WalkerAdapter: func(v []byte) changeset.Walker {
return changeset.AccountChangeSetBytes(v)
},
KeySize: common.HashLength,
Template: "acc-ind-",
New: changeset.NewAccountChangeSet,
Encode: changeset.EncodeAccounts,
},
string(dbutils.StorageChangeSetBucket): {
IndexBucket: dbutils.StorageHistoryBucket,
WalkerAdapter: func(v []byte) changeset.Walker {
return changeset.StorageChangeSetBytes(v)
},
KeySize: common.HashLength*2 + common.IncarnationLength,
Template: "st-ind-",
New: changeset.NewStorageChangeSet,
Encode: changeset.EncodeStorage,
},
string(dbutils.PlainAccountChangeSetBucket): {
IndexBucket: dbutils.AccountsHistoryBucket,
WalkerAdapter: func(v []byte) changeset.Walker {
return changeset.AccountChangeSetPlainBytes(v)
},
KeySize: common.AddressLength,
Template: "acc-ind-",
New: changeset.NewAccountChangeSetPlain,
Encode: changeset.EncodeAccountsPlain,
},
string(dbutils.PlainStorageChangeSetBucket): {
IndexBucket: dbutils.StorageHistoryBucket,
WalkerAdapter: func(v []byte) changeset.Walker {
return changeset.StorageChangeSetPlainBytes(v)
},
KeySize: common.AddressLength + common.IncarnationLength + common.HashLength,
Template: "st-ind-",
New: changeset.NewStorageChangeSetPlain,
Encode: changeset.EncodeStoragePlain,
},
}
func (ig *IndexGenerator) GenerateIndex(blockNum uint64, changeSetBucket []byte) error {
v, ok := mapper[string(changeSetBucket)]
if !ok {
return errors.New("unknown bucket type")
}
log.Info("Index generation started", "from", blockNum, "csbucket", string(changeSetBucket))
/*
todo make work using etl transform
err := etl.Transform(
ig.db,
changeSetBucket,
v.IndexBucket,
ig.TempDir,
dbutils.EncodeTimestamp(blockNum),
getExtractFunc(v.WalkerAdapter),
loadFunc)
if err != nil {
return err
}
*/
var m runtime.MemStats
var bufferFileNames []string
changesets := make([]byte, ig.ChangeSetBufSize) // 256 Mb buffer by default
var offsets []int
var blockNums []uint64
var done = false
// In the first loop, we read all the changesets, create partial history indices, sort them, and
// write each batch into a file
for !done {
if newDone, newBlockNum, newOffsets, newBlockNums, err := ig.fillChangeSetBuffer(changeSetBucket, blockNum, changesets, offsets, blockNums); err == nil {
done = newDone
blockNum = newBlockNum
offsets = newOffsets
blockNums = newBlockNums
} else {
return err
}
if len(offsets) == 0 {
break
}
bufferMap := make(map[string][]uint64)
prevOffset := 0
for i, offset := range offsets {
blockNr := blockNums[i]
if err := v.WalkerAdapter(changesets[prevOffset:offset]).Walk(func(k, v []byte) error {
sKey := string(k)
list := bufferMap[sKey]
b := blockNr
if len(v) == 0 {
b |= emptyValBit
}
list = append(list, b)
bufferMap[sKey] = list
return nil
}); err != nil {
return err
}
prevOffset = offset
}
if filename, err := ig.writeBufferMapToTempFile(ig.TempDir, v.Template, bufferMap); err == nil {
defer func() {
//nolint:errcheck
os.Remove(filename)
}()
bufferFileNames = append(bufferFileNames, filename)
runtime.ReadMemStats(&m)
log.Info("Created a buffer file", "name", filename, "up to block", blockNum,
"alloc", int(m.Alloc/1024), "sys", int(m.Sys/1024), "numGC", int(m.NumGC))
} else {
return err
}
}
if len(offsets) > 0 {
if err := ig.mergeFilesIntoBucket(bufferFileNames, v.IndexBucket, v.KeySize); err != nil {
return err
}
}
return nil
}
func (ig *IndexGenerator) Truncate(timestampTo uint64, changeSetBucket []byte) error {
vv, ok := mapper[string(changeSetBucket)]
if !ok {
return errors.New("unknown bucket type")
}
currentKey := dbutils.EncodeTimestamp(timestampTo)
keys := make(map[string]struct{})
err := ig.db.Walk(changeSetBucket, currentKey, 0, func(k, v []byte) (b bool, e error) {
if err := common.Stopped(ig.quitCh); err != nil {
return false, err
}
currentKey = common.CopyBytes(k)
err := vv.WalkerAdapter(v).Walk(func(kk []byte, _ []byte) error {
keys[string(kk)] = struct{}{}
return nil
})
if err != nil {
return false, err
}
return true, nil
})
if err != nil {
return err
}
historyEffects := make(map[string][]byte)
keySize := vv.KeySize
if bytes.Equal(dbutils.StorageChangeSetBucket, changeSetBucket) || bytes.Equal(dbutils.PlainStorageChangeSetBucket, changeSetBucket) {
keySize -= 8
}
var startKey = make([]byte, keySize+8)
for key := range keys {
key := common.CopyBytes([]byte(key))
copy(startKey[:keySize], dbutils.CompositeKeyWithoutIncarnation(key))
fmt.Println("key - ", common.Bytes2Hex(key))
binary.BigEndian.PutUint64(startKey[keySize:], timestampTo)
if err := ig.db.Walk(vv.IndexBucket, startKey, 8*keySize, func(k, v []byte) (bool, error) {
fmt.Println("key -- ", common.Bytes2Hex(k))
timestamp := binary.BigEndian.Uint64(k[keySize:]) // the last timestamp in the chunk
kStr := string(common.CopyBytes(k))
if timestamp > timestampTo {
historyEffects[kStr] = nil
// truncate the chunk
index := dbutils.WrapHistoryIndex(v)
index = index.TruncateGreater(timestampTo)
if len(index) > 8 { // If the chunk is empty after truncation, it gets simply deleted
// Truncated chunk becomes "the last chunk" with the timestamp 0xffff....ffff
lastK := make([]byte, len(k))
copy(lastK, k[:keySize])
binary.BigEndian.PutUint64(lastK[keySize:], ^uint64(0))
historyEffects[string(lastK)] = common.CopyBytes(index)
}
}
return true, nil
}); err != nil {
return err
}
}
for key, value := range historyEffects {
if value == nil {
if err := ig.db.Delete(vv.IndexBucket, []byte(key)); err != nil {
return err
}
} else {
if err := ig.db.Put(vv.IndexBucket, []byte(key), value); err != nil {
return err
}
}
}
return nil
}
func (ig *IndexGenerator) DropIndex(bucket []byte) error {
//todo add truncate to all db
if bolt, ok := ig.db.(*ethdb.BoltDatabase); ok {
log.Warn("Remove bucket", "bucket", string(bucket))
err := bolt.DeleteBucket(bucket)
if err != nil {
return err
}
return nil
}
return errors.New("imposible to drop")
}
type ChangesetWalker interface {
Walk(func([]byte, []byte) error) error
}
func (ig *IndexGenerator) fillChangeSetBuffer(bucket []byte, blockNum uint64, changesets []byte, offsets []int, blockNums []uint64) (bool, uint64, []int, []uint64, error) {
offset := 0
offsets = offsets[:0]
blockNums = blockNums[:0]
startKey := dbutils.EncodeTimestamp(blockNum)
done := true
if err := ig.db.Walk(bucket, startKey, 0, func(k, v []byte) (bool, error) {
if err := common.Stopped(ig.quitCh); err != nil {
return false, err
}
blockNum, _ = dbutils.DecodeTimestamp(k)
if offset+len(v) > len(changesets) { // Adding the current changeset would overflow the buffer
done = false
return false, nil
}
copy(changesets[offset:], v)
offset += len(v)
offsets = append(offsets, offset)
blockNums = append(blockNums, blockNum)
return true, nil
}); err != nil {
return true, blockNum, offsets, blockNums, fmt.Errorf("walking over account changeset for block %d: %v", blockNum, err)
}
return done, blockNum, offsets, blockNums, nil
}
const emptyValBit uint64 = 0x8000000000000000
// writeBufferMapToTempFile creates temp file in the datadir and writes bufferMap into it
// if sucessful, returns the name of the created file. File is closed
func (ig *IndexGenerator) writeBufferMapToTempFile(datadir string, pattern string, bufferMap map[string][]uint64) (string, error) {
var filename string
keys := make([]string, len(bufferMap))
i := 0
for key := range bufferMap {
keys[i] = key
i++
}
sort.Strings(keys)
var w *bufio.Writer
if bufferFile, err := ioutil.TempFile(datadir, pattern); err == nil {
//nolint:errcheck
defer bufferFile.Close()
filename = bufferFile.Name()
w = bufio.NewWriter(bufferFile)
} else {
return filename, fmt.Errorf("creating temp buf file %s: %v", pattern, err)
}
var nbytes [8]byte
for _, key := range keys {
if _, err := w.Write([]byte(key)); err != nil {
return filename, err
}
list := bufferMap[key]
binary.BigEndian.PutUint64(nbytes[:], uint64(len(list)))
if _, err := w.Write(nbytes[:]); err != nil {
return filename, err
}
for _, b := range list {
binary.BigEndian.PutUint64(nbytes[:], b)
if _, err := w.Write(nbytes[:]); err != nil {
return filename, err
}
}
}
if err := w.Flush(); err != nil {
return filename, fmt.Errorf("flushing file %s: %v", filename, err)
}
return filename, nil
}
func (ig *IndexGenerator) mergeFilesIntoBucket(bufferFileNames []string, bucket []byte, keyLength int) error {
var m runtime.MemStats
h := &etl.Heap{}
heap.Init(h)
readers := make([]io.Reader, len(bufferFileNames))
for i, fileName := range bufferFileNames {
if f, err := os.Open(fileName); err == nil {
readers[i] = bufio.NewReader(f)
//nolint:errcheck
defer f.Close()
} else {
return err
}
// Read first key
keyBuf := make([]byte, keyLength)
if n, err := io.ReadFull(readers[i], keyBuf); err == nil && n == keyLength {
heap.Push(h, etl.HeapElem{keyBuf, i, nil})
} else {
return fmt.Errorf("init reading from account buffer file: %d %x %v", n, keyBuf[:n], err)
}
}
// By now, the heap has one element for each buffer file
batch := ig.db.NewBatch()
var nbytes [8]byte
for h.Len() > 0 {
if err := common.Stopped(ig.quitCh); err != nil {
return err
}
element := (heap.Pop(h)).(etl.HeapElem)
reader := readers[element.TimeIdx]
k := element.Key
// Read number of items for this key
var count int
if n, err := io.ReadFull(reader, nbytes[:]); err != nil || n != 8 {
return fmt.Errorf("reading from account buffer file: %d %v", n, err)
}
count = int(binary.BigEndian.Uint64(nbytes[:]))
for i := 0; i < count; i++ {
var b uint64
if n, err := io.ReadFull(reader, nbytes[:]); err != nil || n != 8 {
return fmt.Errorf("reading from account buffer file: %d %v", n, err)
}
b = binary.BigEndian.Uint64(nbytes[:])
vzero := (b & emptyValBit) != 0
blockNr := b &^ emptyValBit
currentChunkKey := dbutils.IndexChunkKey(k, ^uint64(0))
indexBytes, err1 := batch.Get(bucket, currentChunkKey)
if err1 != nil && err1 != ethdb.ErrKeyNotFound {
return fmt.Errorf("find chunk failed: %w", err1)
}
var index dbutils.HistoryIndexBytes
if len(indexBytes) == 0 {
index = dbutils.NewHistoryIndex()
} else if dbutils.CheckNewIndexChunk(indexBytes, blockNr) {
// Chunk overflow, need to write the "old" current chunk under its key derived from the last element
index = dbutils.WrapHistoryIndex(indexBytes)
indexKey, err3 := index.Key(k)
if err3 != nil {
return err3
}
// Flush the old chunk
if err4 := batch.Put(bucket, indexKey, index); err4 != nil {
return err4
}
// Start a new chunk
index = dbutils.NewHistoryIndex()
} else {
index = dbutils.WrapHistoryIndex(indexBytes)
}
index = index.Append(blockNr, vzero)
if err := batch.Put(bucket, currentChunkKey, index); err != nil {
return err
}
batchSize := batch.BatchSize()
if batchSize > batch.IdealBatchSize() {
if _, err := batch.Commit(); err != nil {
return err
}
runtime.ReadMemStats(&m)
log.Info("Commited index batch", "bucket", string(bucket), "size", common.StorageSize(batchSize), "current key", fmt.Sprintf("%x...", k[:4]),
"alloc", int(m.Alloc/1024), "sys", int(m.Sys/1024), "numGC", int(m.NumGC))
}
}
// Try to read the next key (reuse the element)
if n, err := io.ReadFull(reader, element.Key); err == nil && n == keyLength {
heap.Push(h, element)
} else if err != io.EOF {
// If it is EOF, we simply do not return anything into the heap
return fmt.Errorf("next reading from account buffer file: %d %x %v", n, element.Key[:n], err)
}
}
if _, err := batch.Commit(); err != nil {
return err
}
return nil
}
/**
startkey := dbutils.EncodeTimestamp(blockNum)
bytes2walker := func(b []byte) changeset.Walker {
return changeset.StorageChangeSetBytes(b)
}
err := etl.Transform(
db,
dbutils.StorageChangeSetBucket,
dbutils.StorageHistoryBucket,
datadir,
startkey,
getExtractFunc(bytes2walker),
loadFunc)
if err != nil {
return err
}
if err = SaveStageProgress(db, StorageHistoryIndex, blockNum); err != nil {
return err
}
bytes2walker := func(b []byte) changeset.Walker {
return changeset.AccountChangeSetBytes(b)
}
startkey := dbutils.EncodeTimestamp(blockNum)
err := etl.Transform(
db,
dbutils.AccountChangeSetBucket,
dbutils.AccountsHistoryBucket,
datadir,
startkey,
getExtractFunc(bytes2walker),
loadFunc,
)
if err != nil {
return err
}
*/
func loadFunc(k []byte, valueDecoder etl.Decoder, state etl.State, next etl.LoadNextFunc) error { //nolint
var blockNumbers []uint64
err := valueDecoder.Decode(&blockNumbers)
if err != nil {
return err
}
for _, b := range blockNumbers {
vzero := (b & emptyValBit) != 0
blockNr := b &^ emptyValBit
currentChunkKey := dbutils.IndexChunkKey(k, ^uint64(0))
indexBytes, err1 := state.Get(currentChunkKey)
if err1 != nil && err1 != ethdb.ErrKeyNotFound {
return fmt.Errorf("find chunk failed: %w", err1)
}
var index dbutils.HistoryIndexBytes
if len(indexBytes) == 0 {
index = dbutils.NewHistoryIndex()
} else if dbutils.CheckNewIndexChunk(indexBytes, blockNr) {
// Chunk overflow, need to write the "old" current chunk under its key derived from the last element
index = dbutils.WrapHistoryIndex(indexBytes)
indexKey, err3 := index.Key(k)
if err3 != nil {
return err3
}
// Flush the old chunk
if err4 := next(indexKey, index); err4 != nil {
return err4
}
// Start a new chunk
index = dbutils.NewHistoryIndex()
} else {
index = dbutils.WrapHistoryIndex(indexBytes)
}
index = index.Append(blockNr, vzero)
err = next(currentChunkKey, index)
if err != nil {
return err
}
}
return nil
}
func getExtractFunc(bytes2walker func([]byte) changeset.Walker) etl.ExtractFunc { //nolint
return func(dbKey, dbValue []byte, next etl.ExtractNextFunc) error {
bufferMap := make(map[string][]uint64)
blockNum, _ := dbutils.DecodeTimestamp(dbKey)
err := bytes2walker(dbValue).Walk(func(changesetKey, changesetValue []byte) error {
sKey := string(changesetKey)
list := bufferMap[sKey]
b := blockNum
if len(changesetValue) == 0 {
b |= emptyValBit
}
list = append(list, b)
bufferMap[sKey] = list
return nil
})
if err != nil {
return err
}
for k, v := range bufferMap {
err = next(dbKey, []byte(k), v)
if err != nil {
return err
}
}
return nil
}
}