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d1f1628478
* restores att-aggregation benchmarks
204 lines
6.3 KiB
Go
204 lines
6.3 KiB
Go
package aggregation
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import (
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"fmt"
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"sort"
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"github.com/pkg/errors"
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"github.com/prysmaticlabs/go-bitfield"
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)
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// ErrInvalidMaxCoverProblem is returned when Maximum Coverage problem was initialized incorrectly.
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var ErrInvalidMaxCoverProblem = errors.New("invalid max_cover problem")
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// MaxCoverProblem defines Maximum Coverage problem.
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//
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// Problem is defined as MaxCover(U, S, k): S', where:
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// U is a finite set of objects, where |U| = n. Furthermore, let S = {S_1, ..., S_m} be all
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// subsets of U, that's their union is equal to U. Then, Maximum Coverage is the problem of
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// finding such a collection S' of subsets from S, where |S'| <= k, and union of all subsets in S'
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// covering U with maximum cardinality.
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//
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// The current implementation captures the original MaxCover problem, and the variant where
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// additional invariant is enforced: all elements of S' must be disjoint. This comes handy when
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// we need to aggregate bitsets, and overlaps are not allowed.
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//
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// For more details, see:
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// "Analysis of the Greedy Approach in Problems of Maximum k-Coverage" by Hochbaum and Pathria.
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// https://hochbaum.ieor.berkeley.edu/html/pub/HPathria-max-k-coverage-greedy.pdf
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type MaxCoverProblem struct {
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Candidates MaxCoverCandidates
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}
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// MaxCoverCandidate represents a candidate set to be used in aggregation.
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type MaxCoverCandidate struct {
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key int
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bits *bitfield.Bitlist
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score uint64
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processed bool
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}
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// MaxCoverCandidates is defined to allow group operations (filtering, sorting) on all candidates.
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type MaxCoverCandidates []*MaxCoverCandidate
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// NewMaxCoverCandidate returns initialized candidate.
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func NewMaxCoverCandidate(key int, bits *bitfield.Bitlist) *MaxCoverCandidate {
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return &MaxCoverCandidate{
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key: key,
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bits: bits,
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}
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}
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// Cover calculates solution to Maximum k-Cover problem in O(knm), where
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// n is number of candidates and m is a length of bitlist in each candidate.
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func (mc *MaxCoverProblem) Cover(k int, allowOverlaps bool, allowDuplicates bool) (*Aggregation, error) {
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if len(mc.Candidates) == 0 {
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return nil, errors.Wrap(ErrInvalidMaxCoverProblem, "cannot calculate set coverage")
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}
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if len(mc.Candidates) < k {
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k = len(mc.Candidates)
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}
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if err := mc.Candidates.validate(); err != nil {
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return nil, err
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}
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if !allowDuplicates {
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mc.Candidates.dedup(allowOverlaps)
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}
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solution := &Aggregation{
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Coverage: bitfield.NewBitlist(mc.Candidates[0].bits.Len()),
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Keys: make([]int, 0, k),
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}
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remainingBits := mc.Candidates.union()
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if remainingBits == nil {
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return nil, errors.Wrap(ErrInvalidMaxCoverProblem, "empty bitlists")
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}
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for len(solution.Keys) < k && len(mc.Candidates) > 0 {
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// Score candidates against remaining bits.
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// Filter out processed and overlapping (when disallowed).
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// Sort by score in a descending order.
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mc.Candidates.score(remainingBits).filter(solution.Coverage, allowOverlaps).sort()
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for _, candidate := range mc.Candidates {
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if len(solution.Keys) >= k {
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break
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}
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if !candidate.processed {
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if !allowOverlaps && solution.Coverage.Overlaps(*candidate.bits) {
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// Overlapping candidates violate non-intersection invariant.
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candidate.processed = true
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continue
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}
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solution.Coverage = solution.Coverage.Or(*candidate.bits)
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solution.Keys = append(solution.Keys, candidate.key)
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remainingBits = remainingBits.And(candidate.bits.Not())
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candidate.processed = true
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break
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}
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}
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}
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return solution, nil
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}
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// score updates scores of candidates, taking into account the uncovered elements only.
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func (cl *MaxCoverCandidates) score(uncovered bitfield.Bitlist) *MaxCoverCandidates {
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for i := 0; i < len(*cl); i++ {
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(*cl)[i].score = (*cl)[i].bits.And(uncovered).Count()
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}
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return cl
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}
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// filter removes processed, overlapping and zero-score candidates.
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func (cl *MaxCoverCandidates) filter(covered bitfield.Bitlist, allowOverlaps bool) *MaxCoverCandidates {
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overlaps := func(e bitfield.Bitlist) bool {
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return !allowOverlaps && covered.Len() == e.Len() && covered.Overlaps(e)
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}
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cur, end := 0, len(*cl)
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for cur < end {
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e := *(*cl)[cur]
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if e.processed || overlaps(*e.bits) || e.score == 0 {
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(*cl)[cur] = (*cl)[end-1]
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end--
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continue
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}
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cur++
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}
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*cl = (*cl)[:end]
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return cl
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}
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// sort orders candidates by their score, starting from the candidate with the highest score.
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func (cl *MaxCoverCandidates) sort() *MaxCoverCandidates {
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sort.Slice(*cl, func(i, j int) bool {
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if (*cl)[i].score == (*cl)[j].score {
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return (*cl)[i].key < (*cl)[j].key
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}
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return (*cl)[i].score > (*cl)[j].score
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})
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return cl
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}
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// union merges all candidate bitlists using logical OR operator.
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func (cl *MaxCoverCandidates) union() bitfield.Bitlist {
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if len(*cl) == 0 {
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return nil
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}
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if (*cl)[0].bits == nil || (*cl)[0].bits.Len() == 0 {
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return nil
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}
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ret := bitfield.NewBitlist((*cl)[0].bits.Len())
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for i := 0; i < len(*cl); i++ {
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if *(*cl)[i].bits != nil {
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ret = ret.Or(*(*cl)[i].bits)
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}
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}
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return ret
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}
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// dedup removes duplicate candidates (ones with the same bits set on).
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func (cl *MaxCoverCandidates) dedup(allowOverlaps bool) *MaxCoverCandidates {
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if len(*cl) < 2 {
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return cl
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}
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uncoveredBits := cl.union()
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if uncoveredBits == nil {
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return cl
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}
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cl.score(uncoveredBits).sort()
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for i := 1; i < len(*cl); i++ {
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nonOverlappingBits := (*cl)[i-1].bits.Xor(*(*cl)[i].bits)
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if (*cl)[i-1].score == (*cl)[i].score && nonOverlappingBits.Count() == 0 {
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(*cl)[i-1].processed = true
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}
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}
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return cl.filter(bitfield.NewBitlist((*cl)[0].bits.Len()), allowOverlaps)
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}
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// validate checks candidates for validity (equal bitlength etc).
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func (cl *MaxCoverCandidates) validate() error {
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if len(*cl) == 0 {
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return errors.Wrap(ErrInvalidMaxCoverProblem, "empty list of candidates")
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}
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if (*cl)[0].bits == nil || (*cl)[0].bits.Len() == 0 {
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return errors.Wrap(ErrInvalidMaxCoverProblem, "bitlist cannot be nil or empty")
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}
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bitlistLen := (*cl)[0].bits.Len()
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for i := 1; i < len(*cl); i++ {
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if (*cl)[i].bits == nil || (*cl)[i].bits.Len() == 0 {
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return errors.Wrap(ErrInvalidMaxCoverProblem, "bitlist cannot be nil or empty")
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}
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if bitlistLen != (*cl)[i].bits.Len() {
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return errors.Wrap(ErrInvalidMaxCoverProblem, "bitlists of different length")
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}
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}
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return nil
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}
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// String provides string representation of a candidate.
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func (c *MaxCoverCandidate) String() string {
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return fmt.Sprintf("{%v, %#b, s%d, %t}", c.key, c.bits, c.score, c.processed)
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}
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